Bulletin of Mathematical Biology
○ Springer Science and Business Media LLC
Preprints posted in the last 7 days, ranked by how well they match Bulletin of Mathematical Biology's content profile, based on 84 papers previously published here. The average preprint has a 0.08% match score for this journal, so anything above that is already an above-average fit.
Middleton, C.; Larremore, D.
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An ongoing outbreak of Bundibugyo virus disease (BVD) in the Democratic Republic of the Congo was deemed a public health emergency of international concern in May 2026. To prevent cross-border importation, many countries, including the United States, Canada, India, Thailand, and Kenya have already proposed containment strategies, and others are likely to follow suit. How well (or poorly) are screening and quarantine containment measures are likely to work? We leverage established epidemiological theory and develop a mathematical model of traveler screening and post-arrival quarantine for BVD to answer this question. We find that traveler screening via symptom screening or molecular testing will miss the majority of infected travelers, and should be complemented by post-arrival quarantine and monitoring of sufficient duration to detect those with long incubation periods. Our findings underscore the limitations of border screening and the importance of complementary measures like post-arrival quarantine to prevent local importation of BVD.
Twohig, K. C.; Mansour, M.; Pugar, J. A.; Yuan, K.; Pocivavsek, L.; Klishin, A. A.
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Biological systems evolve as continuous dynamical processes, but at organ-scale and across human lifespans they are rarely observed longitudinally--population data typically exist instead as sparse, cross-sectional snapshots. Inferring lifespan dynamics from such data requires methods distinct from those used at cellular and tissue scales where dense observations are accessible. We address this problem in the thoracic aorta, where surgical decisions currently rest on static, age- and sex-agnostic diameter thresholds that reduce three-dimensional morphology to a single scalar. Treating normal aortic morphology as a stochastic dynamical system, we pose a continuous-time drift-diffusion process in a two-coordinate state space of normalized surface area (A) and normalized fluctuation in integrated Gaussian curvature ({delta} K), and fit closed-form solutions of the Fokker-Planck equation by maximum likelihood to a sex-balanced, age-uniform cohort spanning infancy to age 99. Inter-individual variability is treated as a fitted diffusion parameter rather than as residual scatter, which is distinct from prior normative studies that report variability as scatter around a regression line. The framework identifies two growth regimes for aortic size (childhood expansion followed by persistent adult growth, with adult males growing approximately 70% faster than adult females) and a single dynamical regime for aortic shape, with heteroscedastic variability accumulating at a rate comparable to the mean drift over the lifespan. Applied to independent cohorts of acute and chronic thoracic aortic dissections, the multivariate model identifies over 95% as statistical outliers via Mahalanobis distance, consistently outperforming either coordinate alone. The same probabilistic envelope that describes normal aging thus defines a baseline against which disease can be detected, supporting a shift toward dynamic, age- and sex-aware assessment of thoracic aortic pathology.
Schmidt, P.; Preskorn, S.
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In February 2026, the FDA announced that a single pivotal phase 3 (P3) trial would become the new default standard for drug approval - a regulatory direction that had been legally enabled since the FDA Modernization Act of 1997. This announcement has strategic, scientific, and economic implications for drug developers, contract research organizations (CROs), and biotech investors. We argue that the expansion of this framework, originally reserved for various niche submissions, represents a paradigm change, dramatically increasing the value of rigorous early phase (P1 and P2) trial design, requiring sponsors to establish both statistical efficacy signals and mechanistic biological understanding before entering phase 3. Using a CNS indication cost model, we show that single P3 approval can reduce total development expenditure from approximately $447 million over 14 years to $297 million over 12 years - a savings of $150 million and providing two years of additional commercial runway for a modeled CNS drug. Case examples including lecanemab, omaveloxolone, and tofersen illustrate how biomarker-informed early phase strategies can establish the confirmatory evidence necessary for single-trial approval. We provide practical guidance for maximizing the value of P1 and P2 under this evolving framework.
KESOZI Digital Twin, ; Agumba, J. O.; Namusonge, L.; Ogendo, J.; Hassan, M. A.; Pembere, A.; Takavarasha, M.
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Childhood diarrheal disease remains a leading cause of morbidity and mortality among children under five years in sub-Saharan Africa, particularly in settings affected by inadequate sanitation, climate variability, malnutrition, and limited healthcare access. Conventional forecasting approaches are often constrained by sparse surveillance data, weak spatial representation, and limited incorporation of mechanistic disease dynamics. This study presents a Physics-Informed Multimodal Artificial Intelligence Digital Twin framework that integrates Physics-Informed Neural Networks, Graph Neural Networks, diffusion-reaction epidemiological modeling, multimodal fusion learning, and Digital Twin simulation to estimate and predict childhood diarrheal disease burden in Kenya, Somaliland, and Zimbabwe. Using public epidemiological, environmental, climate, sanitation, and synthetic proof-of-concept datasets, the framework modeled temporal disease dynamics, spatial transmission, pathogen-attributed burden, and outbreak trajectories while enforcing epidemiological consistency through physics-informed optimization. Results demonstrated robust forecasting performance, enhanced spatial transmission modeling, uncertainty-aware predictions, and realistic outbreak simulations across the three countries. Rotavirus, Shigella, and Cryptosporidium were identified as major contributors to modeled mortality burden, while unsafe water exposure, poor sanitation, malnutrition, and climate-sensitive transmission substantially increased disease risk. Compared with a Bayesian baseline model, the multimodal framework achieved superior nonlinear risk characterization, geospatial learning, and temporal prediction. These findings highlight the potential of scientific machine learning and digital twin systems for infectious disease surveillance, outbreak forecasting, climate-health analytics, and evidence-based public health decision-making in low-resource African settings. Keywords: Physics-Informed Neural Networks, Graph Neural Networks, Digital Twin, Childhood Diarrheal Disease, Epidemiology, Kenya, Somaliland, Zimbabwe, Scientific Machine Learning, Spatial Epidemiology, Multimodal Fusion
Iggidr, Y.; Ruktanonchai, N. W.; Benhana, B.; Turbe, V.; Bauzile, B.; Ward, A.; Cohen, J.; Pothin, E.; Champagne, C.
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Malaria control programs are increasingly tailored at subnational scales; however, neighboring areas remain connected through human mobility, allowing parasite importation that may undermine independently timed interventions. Although the spatial targeting of control has been the focus of extensive research, the epidemiological consequences of temporal misalignment in intervention deployment across interconnected regions remain to be elucidated. We investigate how asynchronous timing of malaria interventions affects transmission dynamics using a two-patch susceptible-infected-susceptible metapopulation model. We compare synchronous and asynchronous intervention schedules and quantify their impact using measures of excess cumulative incidence attributable to asynchrony. The measure that will be used for this purpose is referred to as Asynchrony Induced Growth (AIG). Across a range of 10,000 parameter combinations, asynchronous implementation has been observed to result in a heightened incidence compared to synchronized deployment, though the impact is typically negligible in most endemic settings. Sensitivity analyses indicate that the impact is most significant when interventions are highly effective, infectious duration is brief, and transmission intensity approaches the elimination threshold. In such circumstances, asynchrony has the potential to substantially inflate case numbers, delay transmission interruption, or even prevent elimination entirely. In illustrative scenarios that reflect realistic settings, synchronizing interventions has been shown to avert large numbers of infections and shorten elimination timelines by years to decades. These findings demonstrate that, beyond spatial targeting, temporal coordination of interventions across connected areas can meaningfully enhance malaria control and elimination. Coordinated timing may be particularly valuable for cross-border or near-elimination programs and should be considered in operational planning and resource allocation.
Mapahla, L.; Kleinschmidt, I.; Silal, S. P.
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Artemisinin partial resistance has not yet been reported in southern Africa. Therefore, the magnitude of the spread of artemisinin partial resistance in this region is yet to be quantified. Using a two strain metapopulation modelling framework, we explored possible spread of artemisinin partial resistance in eight connected countries with high level of human movement. We explored three scenarios in which artemisinin partial resistance may first enter circulation: low malaria transmission level country; high malaria transmission level country and all countries and compared to an artemisinin partial resistance free scenario. Partial rank correlation coefficient sensitivity analysis was performed to identify key parameters that drive artemisinin partial resistance spread. Our model simulations show that high mobility between countries can increase the spread of mutations associated with delayed clearance. Suggesting that artemisinin partial resistance will be confirmed (>5% partial resistant cases) after 14 years of circulation if it is to appear in southern Africa. We confirm that human movement, both human-to-mosquito and mosquito-to-human probabilities of transmission, were significant and highly sensitive parameters in the spread of artemisinin partial resistance. Human mobility between countries can facilitate the spread of artemisinin partial resistance. More research is needed to identify strategies to preserve the efficacy of artemisinin-based combination therapies in the presence of partial artemisinin resistance, which may eventually lead to treatment failure and necessitate regimen replacement.
Serrano, A. E.
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Machine learning (ML) has emerged as a transformative technology across biomedical and life science sectors, with applications spanning drug discovery, medical imaging, genomics, and clinical decision support (Goecks et al., 2020; Patel et al., 2020). Despite exponential growth in ML-related publications, from fewer than 100 articles in 2003 to nearly 25,000 by 2021 (NCBI, 2022), adoption among industry professionals remains uneven and sector-dependent. Understanding what drives or inhibits this adoption is critical for organisations seeking to leverage ML capabilities in research and clinical practice. Technology adoption in organisational contexts has been extensively studied through the Technology Acceptance Model (TAM), originally proposed by Davis (1989) and subsequently extended to incorporate external variables influencing perceived usefulness (PU) and perceived ease of use (PEU) (Venkatesh & Davis, 1996). While TAM has been applied across multiple industries, its application within biomedical and life science contexts remains limited, and the industry-specific factors that shape ML acceptance in this sector have not been systematically examined. Two external variables are particularly relevant to life science professionals. First, the bibliometric journal impact factor (JIF) functions as a cognitive signal of scientific credibility, a sector where evidence-based decision-making is culturally embedded, and publication quality serves as a proxy for technological legitimacy (Garfield, 1996). Second, technology hype, operationalised through the Gartner Hype Cycle framework, represents a social influence variable that shapes organisational expectations and investment decisions around emerging technologies (Gartner Inc., 2018). Whether these variables influence ML acceptance among life science professionals, alongside individual knowledge and experience, has not been empirically tested. This study addresses that gap by investigating ML technology acceptance among 213 biomedical and life science professionals across EMEA, LATAM, and North America, using a cross-sectional quantitative survey and PLS-SEM analysis. The TAM model is extended with three external variables, JIF, technology hype, and prior knowledge and experience, to test their influence on PU and PEU in this specific professional context. Additionally, the study examines demographic and regional differences in ML acceptance, with particular attention to variation between academic researchers and healthcare professionals. The findings contribute a validated, sector-specific extension of TAM for life sciences, provide actionable insights for organisations seeking to accelerate ML implementation, and establish a framework for future subsector-specific research.
Molla, A. R.; Maity, A.; Saha, S.; Bhattacharya, R.; Chakraborty, A.; Biswas, S.; Nath, S.
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Skin cancer requires early detection for improved survival rates. Most existing methods rely on deep learning based image classification, which is affected by visual similarity among lesions. Fewer studies use Gene Expression (GE) analysis, which captures molecular characteristics but lacks structural and visual details. To overcome limitations of individual modalities, this paper proposes a multimodal framework integrating dermoscopic images and GE profiles for skin cancer classification. EfficientNet and logistic regression are used for image based analysis and genomic skin lesion profiling, respectively, followed by fuzzy rule based decision systems to reduce uncertainty within individual modalities. Finally, fuzzy fusion combines predictions from both modalities using uncertainty based weighting of classifier outputs. The experimental findings show that both the image based and GE based classification models individually achieved accuracies of nearly 92%. However, the integration of prediction results through the proposed fuzzy fusion strategy further enhanced the classification performance, achieving an overall accuracy of 94.25%. The results obtained outperform contemporary methods, highlighting the effectiveness of combining complementary multimodal information compared with single modality approaches.
Odeny, T. A.; Adhiambo, H. F.; Mangale, D.; Makanga, P. K.; Odeny, B.; Okuku, F.; Zhou, C.; Geng, E.; Carson, J.; Mudhune, V.; Bukusi, E.; Semeere, A.
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Abstract Background: Kaposi sarcoma (KS) is the most common cancer among men in several Eastern African countries, yet treatment monitoring relies on imprecise, time-consuming ruler-based measurements defined by the AIDS Clinical Trial Group (ACTG). This method suffers from inter-observer variability, fails to capture lesion height or true geometric area, and performs poorly on dark skin. SkinScan3D (SS3D) is a portable, low-cost, AI-enabled 3D imaging device that provides objective measurements of KS skin lesion area, height, volume, and color. The Precision Imaging to Evaluate Kaposi Sarcoma (PRIME-KS) study evaluates whether SS3D provides more reproducible and accurate lesion measurements than the standard method, and validates its integration into routine clinical workflows in Kenya and Uganda. Methods: PRIME-KS is a multicountry prospective mixed-methods study with two clinical objectives. Objective 1 is a cross-sectional diagnostic accuracy study comparing SS3D with ruler-based measurement in 50 adults with KS (150 lesions) across sites in Kenya and Uganda. Two clinicians independently measure three lesions per participant using both methods. The primary outcomes are concordance correlation coefficient (CCC) for inter-rater reproducibility, and co-efficient of determination for accuracy. Objective 2 is a non-randomized before-and-after pilot study in 100 patients at three sites, evaluating device usability, acceptability, appropriateness, and feasibility using validated instruments, along with time-and-motion studies and activity-based micro-costing. Prior to these clinical objectives, a formative study used focus group discussions, discrete choice experiments, and human-centered design workshops to refine the SS3D device and protocols with end-user input. Discussion: PRIME-KS will provide the first rigorous evaluation of a 3D imaging device for monitoring KS treatment response in routine clinical settings. If SS3D demonstrates superior reproducibility and clinical utility, it could reduce unnecessary chemotherapy exposure and associated toxicities by enabling earlier, more objective assessment of treatment response. Trial registration: ClinicalTrials.gov NCT06898203, registered 27 March 2025. Pan African Clinical Trials Registry PACTR202603523439856. Keywords Kaposi sarcoma, SkinScan3D, 3D imaging, treatment monitoring, diagnostic accuracy, implementation science, usability, human-centered design, Kenya, Uganda
Kim, D.; Pasco, R.; Johnson, K. E.; Fox, S. J.; Reich, N. G.; Meyers, L. A.
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Accurate outbreak forecasts are critical for timely and effective public health response. In the United States, however, most forecasts are produced at the state level, which can mask substantial sub-state heterogeneity and limit their utility for local planning. We generated and evaluated forecasts of the percentage of Emergency Department visits attributable to influenza across 173 large metropolitan Health Service Areas (HSAs) using a gradient boosting quantile regression (GBQR) model, and compared their accuracy to forecasts derived from state-level data alone. At a one-week, two-week and three-week horizon, local forecasts outperformed state-based forecasts in 98.8%, 90.8%, and 78.6% of HSAs, respectively, achieving mean weighted interval scores that were on average a 39.2% lower (95% range: 5.9% to 76.7%), 19.6% lower (-6.3% to 59.5%) , and 11.4% lower (-11.7% to 44.9%), respectively. The performance advantage of local forecasting was strongest in HSAs representing a smaller share of their state's population and increased with the proportion of the HSA population living in urban areas and the number of metropolitan areas within a state. These results, based on an analysis of HSAs with populations greater than 250,000, demonstrate that fine-scale modeling can substantially improve forecast accuracy and highlight the potential value of local forecasts for outbreak preparedness and response.
Walinjkar, A.
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Background: Circulating tumour DNA (ctDNA) liquid biopsy is now established across oncology for early cancer detection, minimal residual disease surveillance, and treatment monitoring. Detection thresholds for all current ctDNA assays are derived empirically through receiver operating characteristic analysis on training cohorts - a statistically valid but theoretically uninformed approach that does not specify the minimum detectable tumour fraction given assay technical characteristics, nor identify when increasing sequencing depth ceases to provide additional clinical information. Methods: We model ctDNA detection as a binary hypothesis testing problem with Binomial-distributed mutant allele counts against a sequencing error noise floor. The Neyman-Pearson lemma is applied to derive the uniformly most powerful detector and the minimum detectable tumour fraction in closed form. The sequencing assay is modelled as a binary symmetric channel and Shannon channel capacity is calculated. Empirical validation uses n=61 data points extracted from five published peer-reviewed analytical validation studies across five independent institutions in the US and EU (2018 - 2025): Yu et al. 2022, Stetson et al. 2018, Frydendahl et al. 2023, Northcott et al. 2024, and Cheng et al. 2025. Results: The minimum detectable tumour fraction is derived in closed form as f_min approximately equal to (z_alpha + z_beta) multiplied by the square root of (epsilon divided by N), where N is sequencing depth, epsilon is the platform error rate, and z_alpha, z_beta are standard normal quantiles at the specified false positive and false negative rates. Shannon channel capacity is C = 1 minus H(epsilon) bits per read, where H(epsilon) is binary entropy. Empirical validation yields 84.3% agreement for single-locus assays. Discordance for multi-locus tumour-informed assays (NeXT Personal, duplex WGS) is consistent with the single-locus model scope and identifies the principal theoretical extension required. Conclusions: This framework provides the first formal Neyman-Pearson optimality proof for ctDNA detection, a closed-form detection limit, and a platform-independent efficiency metric for NHS and regulatory standardisation. Keywords: circulating tumour DNA; liquid biopsy; Neyman-Pearson detection; Shannon channel capacity; sequencing depth; limit of detection; minimal residual disease; signal detection theory
Ramadan, I.; Hariri, M.; Shalakhti, O.; Alawa, J.; Godier-Furnemont, A.; Traboulsi, A. A.-R.; MOWAFI, H.
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Abstract: Background: Acute war-related traumatic wounds present significant challenges due to significant soft-tissue damage/loss, risk of contamination, limited access to antimicrobial therapy, need for delayed closure, and limited access to surgical and wound care. Negative Pressure Wound Therapy (NPWT) has been used effectively to reduce the volume of soft-tissue defects, edema, and infection in traumatic wounds, and to promote growth of healthy granulation tissue. However, conventional NPWT devices are costly and electricity-dependent, limiting their utility in conflict settings. Methods: This retrospective cohort study evaluated the use of PragmaVAC, a manually operated, electricity-independent NPWT device, in patients across three hospitals in Gaza with conflict-related wounds that were deemed by the treating surgeon to be unsuitable for primary closure. Secondary analysis was performed of clinical records of patients treated with the PragmaVac NPWT device to assess ability to achieve a primary outcome of wound bed with healthy granulation tissue, time to primary outcome, and rates of adverse effects. Secondary outcome of wound closure and closure method was also assessed. Results: Treatment with PragmaVAC manual NPWT was prescribed to 88 patients. Of those, 27 (31%) had incomplete documentation of their wound healing or were lost to follow up. The remaining 61 (69%) had complete documentation of their wound healing, complications, and final outcome with 59 (67%) successful closure and 2(2%) failure. Conclusion: The use of the PragmaVAC NPWT device provided a safe, effective wound care option to achieve wound closure for large conflict-related traumatic wounds in resource-limited settings. Future studies may further evaluate such use through prospective trials, evalutions of patients' experiences with manual NPWT, and evaluating outcomes beyond primary wound closure to include medium- and long-term complications, cosmesis, and cost of therapy.
Goel, K. P.; Myall, N. J.; Dickerson, J.; Caswell-Jin, J. L.; Johnson, T.; Worth, J. E.; Gensheimer, M. F.
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PURPOSE: To develop and validate an artificial intelligence-enabled platform that converts unstructured cancer trial eligibility criteria into structured queries and quantifies trial eligibility across advanced/metastatic cancer trials. METHODS: We downloaded actively recruiting US interventional treatment trials for advanced/metastatic breast cancer, colon cancer, and non-small cell lung cancer from ClinicalTrials.gov. Medical oncologists created 24 synthetic patient vignettes. A large language model converted trial eligibility criteria into Structured Query Language (SQL) code and patient information into structured records, enabling automated matching. Cancer details and treatment history were considered, but not laboratory results or comorbidities. Validation included physician editing of generated eligibility code for 30 trials, and blinded physician eligibility assessment for five trials. We then evaluated how age, ECOG performance status, sex, and ZIP code affected the number of eligible trials. RESULTS: Of 833 candidate trials, 746 met inclusion criteria. In physician review of 30 trials, edits to generated SQL did not change any of 720 trial-patient eligibility determinations for 24 synthetic patients. In blinded validation across 120 trial-patient pairs, automated matching achieved 97% accuracy. Across synthetic patients, eligible trials ranged from 31 to 258 when there were no geographic restrictions. Eligibility decreased markedly with worse performance status and with geographic restriction (both p<0.001). Later-phase, randomized, and molecularly selective trials had fewer eligible patients. CONCLUSION: AI-based structuring of trial eligibility criteria can support accurate, scalable measurement of potential cancer trial eligibility. In this demonstration, performance status, geography, and age were major determinants of eligibility across the active metastatic trial landscape.
Cantrell, L.; Karampatsas, K.; Andrews, N.; Beach, S.; Bentley, E.; Berardi, A.; Bijlsma, M. W.; Cagil Kocana, C.; Daniel, O.; French, N.; Hall, T.; Izu, A.; Khalil, A.; Kwatra, G.; Kyohere, M.; Madhi, S. A.; Mboizi, R.; Miselli, F.; Nielsen, M.; Thorn, N.; van de Beek, D.; Walker, K.; Heath, P. T.; Le Doare, K.; Voysey, M.; PREPARE WP3 Study Group,
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Vaccines to prevent infant group B streptococcus (GBS) disease are advancing, with licensure likely based on safety and immunologic endpoints rather than clinical efficacy data. This approach requires robust, generalisable serological thresholds of risk reduction (SToRRs). We combined data from six case-control studies in Europe and Africa to define SToRRs for early-onset (EOD) and late-onset (LOD) GBS disease. Across diverse epidemiological and healthcare settings, anti-capsular polysaccharide IgG concentrations were consistently higher in infants who remained disease free than in those who developed disease. Higher antibody concentrations were required to reduce the risk of EOD than LOD, and higher concentrations were required for serotype Ia than for serotype III. This study provides a quantitative framework to support correlates-based evaluation and potential licensure of maternal GBS vaccines.
Beer, S.; Simpkin, A. J.; Eldeeb, S. Y.; Zar, H. J.; Stein, D. J.; Dunn, E. C.; Smith, A. D. A. C.
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Background: In prospective cohort studies, where an exposure is collected repeatedly, interest often lies in determining whether the timing of that exposure has a differential effect on a later outcome. The Structured Life Course Modeling Approach (SLCMA), where users select between temporal hypotheses of exposure specified a priori, provides one way to analyse such longitudinal data. However, few studies using SLCMA consider the effect of time-varying covariates (TVC) which may impact associations. Methods: We present a modified version of the SLCMA - called direct and mediated effects (DME)-SLCMA - which corrects for TVC. We first develop the DME-SLCMA method, test it through simulation, and apply it to psychosocial data from the Drakenstein Child Health Study (DCHS, n=336) to investigate relationships between maternal psychopathology, TVC of socioeconomic status, and offspring depressive symptoms. Results: We found that, on average, offspring depressive symptoms score increased by 3.9% (95% CI: 1.0%-6.9%, p = 0.039) for each unit of maternal psychopathology (SRQ) at 48 months whilst adjusting for time-varying socioeconomic status (at 18, 30, 42 and 54 months). Our simulations identified several realistic scenarios where selections ignoring TVC - with TVC mediated exposure effects present - were prone to be incorrect, including our DCHS example. Conclusion: DME-SLCMA is a robust new approach for life course modelling in the presence of time-varying covariates. We recommend adjusting for TVC whenever possible, and, when not possible, our simulation study identified that scenarios where mediated effects are comparable, or greater, in magnitude to direct effects are most prone to confounding.
Gobeil, E.; Bourgault, J.; Enault, M.; Cote, V.; Mitchell, P. L.; Ruel, L.-J.; Girard, A. S.; Vohl, M.-C.; Arsenault, B. J.
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Metabolic dysfunction-associated steatotic liver disease (MASLD) is rapidly increasing worldwide, yet effective targeted therapies remain limited. To better understand the molecular mechanisms underlying MASLD, we performed an integrated proteogenomic analysis of human liver tissue. Using mass spectrometry, we quantified 2,744 proteins in 504 liver biopsies from the Quebec Obesity Biobank and examined changes across disease stages. To investigate causality, we integrated liver proteomics with RNA sequencing and genome-wide genotyping to map thousands of protein quantitative trait loci (pQTLs) and expression quantitative trait loci (eQTLs). These molecular data were combined with summary statistics from a meta-analysis of genome-wide association studies including 16,532 MASLD cases and 1,240,188 controls. Mendelian randomization and genetic colocalization analyses revealed that most proteins differentially expressed across MASLD stages were not causally implicated in disease risk, whereas several genetically predicted liver proteins showed evidence of causal effects. Among these, higher hepatic levels of the MTARC1 protein were causally associated with MASLD and hepatic fat accumulation. Phenome-wide analyses suggested that MTARC1 inhibition may reduce the risk of cirrhosis, hepatocellular carcinoma, and cholelithiasis while improving lipid profiles. Notably, the causal MTARC1 variant influenced liver protein levels but not gene expression. Genetic analyses also identified ERLIN1 and HSD17B13 as potential therapeutic targets. In contrast, eQTLs and pQTLs at other loci such as GCKR showed opposite effects on MASLD risk. These findings highlight the importance of integrating tissue proteomics with human genetics to distinguish biomarkers from causal drivers and to identify promising therapeutic targets for MASLD.
Chen, M.; Li, X.; Yang, K.; Taramasso, M.
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**Abstract** **Background:** Transcatheter edge-to-edge repair (TEER) is an established treatment for mitral regurgitation but remains highly dependent on operator experience and complex transesophageal echocardiography (TEE)-guided intraprocedural imaging. Artificial intelligence (AI)-based semantic segmentation may improve procedural reproducibility and intraprocedural guidance; however, no TEER-specific segmentation framework has been reported. **Objectives:** To develop and evaluate AutoClip, a clinician-driven AI-guided TEE semantic segmentation model designed for simultaneous delineation of mitral valve anatomy and in-vivo TEER device components. **Methods:** A retrospective proof-of-concept study was conducted using 987 intraprocedural TEE frames derived from 10 video clips in 3 patients undergoing MitraClip G4 implantation. Seven semantic labels, including mitral leaflets and device components, were manually annotated using ITK-SNAP. Following standardized preprocessing and region-of-interest extraction, an Attention U-Net architecture was trained frame-wise on bicommissural and corresponding X-plane TEE views. Model performance was assessed using mean intersection-over-union (IoU) and Dice coefficient on an independent test set. **Results:** The Attention U-Net demonstrated improved sensitivity to small device structures compared with conventional U-Net architectures. Preliminary training performance achieved a mean IoU of approximately 0.93, while independent test performance reached a mean IoU of 0.46 across foreground classes. Qualitative assessment demonstrated feasible simultaneous segmentation of mitral leaflets, clip arms, grippers, and delivery shaft during TEER procedures. **Conclusions:** AutoClip represents a proof-of-concept TEER-specific TEE semantic segmentation framework initiated through a clinician-oriented workflow without formal computer science expertise. Although preliminary accuracy remains modest due to limited sample size, this study establishes a reproducible pathway for future AI-assisted intraprocedural guidance systems and larger multicenter development efforts in structural heart interventions.
shao, w.; Ammerman, B.; Jacobucci, R.
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Suicidal risk may be encoded in everyday communication patterns but diluted in routine digital interactions. We introduce a method for surfacing this latent signal: training per-person language model agents on individuals' authored text (the on-screen text each participant typed, captured whenever a keyboard was visible in screenshots) and placing those agents in simulated social interactionsa communicative stress test. Using data from 79 adults with recent suicidal ideation, we ne-tuned individual LoRA adapters on Qwen3-8B using each participant's authored text, then placed agents in standardized conversations with probe personas. Agent-generated risk language was associated with EMA-measured suicidal ideation (r= .576, p < .001), with a single neutral small-talk probe performing nearly as well (r= 551). A shue control conrmed the signal is person-specic (r= .071 when adapters were mismatched), and automated descriptions of participants' general smartphone activity produced no signal, conrming specicity to interpersonal communication. A prompt ablation demonstrated partial robustness to removal of disclosure-encouraging language (r = .430). This proof-of-concept demonstrates that simulated social interaction can amplify latent vulnerability signals, bridging digital phenotyping, generative AI, andsuicide theory.
Gonzales, M.; Kang, X.; Adamson, M. M.; Chao, S. Z.; Yoon, B. C.
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PURPOSE: Alzheimer disease (AD) is associated with cognitive impairment, brain atrophy, and elevated amyloid-beta and tau. The study aimed to characterize regional atrophy associated with elevated amyloid-beta and tau, as measured by [18F]florbetapir (FBP) and [18F]flortaucipir (FTP) positron emission tomography (PET), respectively, and determine whether combining PET and atrophy data improves the prediction of cognitive impairment. METHODS: Alzheimer Disease Neuroimaging Initiative data (n = 381) were retrospectively analyzed. PET results were correlated with cortical thickness, gray matter (GM) volumes, Mini-Mental State Examination, and Montreal Cognitive Assessment. Linear/logistic regression and area under the curve (AUC) were used to evaluate for significant correlations and compare performances in distinguishing cognitive impairment, respectively. RESULTS: Incremental loss of cortical thickness and GM volume was observed from FBP-/FTP- (n = 205) to single PET-positive (FBP+/FTP-, n = 133; FBP-/FTP+, n = 5) and FBP+/FTP+ (n = 38) groups, particularly in the temporal and parietal lobes. FBP+/FTP+ showed the most severe cortical thickness loss in the entorhinal cortex, temporal lobe GM atrophy, and cognitive impairment. Adding brain atrophy as the third variable resulted in higher odds ratios and improved AUCs for cognitive impairment, with FBP+/FTP+/temporal GM or entorhinal cortical atrophy+ demonstrating the strongest associations with cognitive impairment. CONCLUSION: A multimodal approach combining PET and MRI may help improve the assessment of cognitive impairment in AD.
Geoly, A.; McCalley, D. M.; Struckmann, W.; Azeez, A.; Wong, B.; Kim, B.; Ninomiya, S.; Ahmed, S.; Kim, J. P.; McRae-Clark, A. L.; Froeliger, B.; Sahlem, G. L.
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Background: Repetitive Transcranial Magnetic Stimulation (rTMS) is a promising treatment across addictive disorders including Cannabis Use Disorder (CUD). Targeting incentive-salience circuitry via the ventromedial prefrontal cortex (vmPFC) and central-executive circuitry via the left dorsolateral prefrontal cortex (LDLPFC) are both promising treatment approaches; however, to date structural targets have predominated whereas functional targeting may allow for more precision. In this pilot trial we adapted a functional Magnetic Resonance Imaging (fMRI) Regulation of Craving (ROC) task to generate fMRI-based rTMS targets in the vmPFC and LDLPFC. Methods: We recruited treatment-seeking participants with moderate or severe CUD as a part of an open-label trial and administered an adapted ROC-task during fMRI following 24-hours of cannabis abstinence. We identified sub-portions of maximal activation of the LDLPFC when participants thought of long-term consequences of cannabis use (Later) and of the vmPFC when participants thought of short-term positive aspects of cannabis use (Now). We hypothesized that our task would generate acceptable rTMS targets in >66% of baseline fMRI scans. Results: A total of 20-participants enrolled in the trial (50%F, age=33.3+9.8) and completed the baseline fMRI. The adapted ROC-task elicited group level activation in the LDLPFC and precuneus in the Later>Now and in the bilateral vmPFC, ACC, and striatum in the Now>Later contrast. Acceptable functional targets resolved in both the vmPFC and LDLPFC in 19 of 20 participants (one participant did not tolerate MRI). Conclusions: The adapted ROC-task elicits activation in incentive salience and central executive circuitry and can feasibly generate rTMS targets when using a cluster selection algorithm.